Fun with Docker

I want to play with Docker but need to get some fundamentals down straight. A couple of reasons, I want to utilize Shiny Studio and I would also like to use Continuous Development functions from Gitlab.

Here are some fundamental Docker commands that I took from this tutoral by rOpenSci Labs

The first FROM

The docker image you want to use.

FROM rocker/verse:3.3.2

The RUN command executes shell commands. Common usage would include install required packages.

RUN R -e "install.packages('gapminder', repos = 'http://cran.us.r-project.org')"

The ADD command allows you to add files

ADD analysis.R /home/rstudio/

Build the image

docker build -t my-r-image .

Launch the image.

docker run --rm -p 8787:8787 my-r-image

The period

Below is a .gitlab-cy.yml file; it seems there are some similarities between the Docker commands above.

image: rocker/verse:3.4.1

pages:
  stage: deploy
  script:
  - Rscript -e "bookdown::render_book('index.Rmd', 'all', output_dir = 'public')"
  artifacts:
    paths:
    - public
  only:
  - master

I tried these steps on my Linux box and was getting a permission denied error. An extra step of creating a user group is required.

The video in this tutorial is what helped me figure it out.

I will save for another post on why in the world you would want to do these things!

Avatar
Kevin Gilds
Nonprofit Data Professional

R/Shiny Developer with expertise in helping nonprofits collect, manage and analyze their program data.

Related